Eggman moves in with Sonic and Tails while his fortress is under repairs. While there, he drives Sonic and Tails to the breaking point with his annoying traits.
Knuckles feels that the only reason Sonic always bests him is that Sonic has better luck. So, Knuckles tries to run out his bad luck and reset the luck balance of the universe by constantly putting himself in harm’s way.
After an explosion at his evil lair sends him into a time loop, Eggman relives the same day over and over. He must convince Sonic and the gang to help him fix this time anomaly.
Sonic is accused of stealing a particle accelator from Eggman at first, then everyone starts accusing him of stealing their stuff too. Sonic then searches for the real culprit.
Sonic realizes he has 7 minutes to return Amy's library book and ends up racing the clock, as he battles slow senior citizens, burger cravings, and an angry Eggman.
When Orbot and Cubot discover a group of rejected Cubot prototypes hiding in the jungle, they seek the help of Sonic and Tails to protect them from Eggman.
Sonic, Knuckles and Amy seemingly start a fire in Tails' workshop trying to help an injured Perci, with each telling different interpretations of the story.
Sonic lets martial arts action movie star Tommy Thunder follow him around and observe his "hero process". However things get bad when Tommy's over-the-top ego clashes with Sonic's and starts claiming credit for the team's battles.
After Tails' Ultrasonic Speed Amplifier device makes Sonic go so fast that he disappears and is trapped in another plane of existence, the team must think of a way to get him back.
Tails uses a machine to separate himself into five different Tails to multiply his brain productivity, but each piece only comes out with a small portion of his brain power, causing problems for his friends and Eggman.
Tails' creation Hypno-bot teams up with Eggman to conquer the world, so Team Sonic teams up with their robot duplicates to defeat Hypno-bot and his army.
Dealing with Shadow's anger, Eggman switches places with his counterpart from the dimension where Sonic doesn't exist. Now Sonic must deal with both Eggman, plus Shadow and Metal Sonic before the two dimensions collapse.