Alan and Peter capture the assassin Scythe and demand to know the whereabouts of Julia’s mother. Balleseros confronts Hatake about the missing Inuit children, while Anana and her brother learn of Daniel’s fate. Concerns that the virus is in Ilaria’s possession again forces Alan and the team off the base to search the world in order to retrieve it.
15 months after the events at Arctic Biosystems, new CDC team with the addition of biotoxicologist Kyle Sommer respond to a potential outbreak on a Windjammer in the Northern Pacific. Their search leads them to an island occupied by a mysterious cult led by the charismatic Michael. Meanwhile, 30 years in the future, Walker arrives at the same island searching for Alan Farragut.
As Michael struggles to keep the abbey under control, the CDC team moves closer toward tracking the source of the pathogen. Alan fights the urge to rejoin his team and confronts the reality about Peter’s allegiances. In the future, Walker makes a desperate attempt to escape from her delusional father, with potentially deadly consequences.
As the CDC team reels from the devastation at the Abbey, the Coast Guard arrives with news of a new outbreak. Meanwhile, incensed from her imprisonment, Amy takes control of the Abbey, locking Michael in the pit. Jordan, convinced her baby still lives, reveals the truth of the immortals to Kyle in exchange for his help. In the future, Walker's quest for Hatake's missing sword causes her to delve deeper into the Abbey's secrets