決勝戦。ブルース&炎山と、ロックマン&熱斗の激しいぶつかり合い。だが、そんな闘いのさなか会場であるメガフロートが何者かに破壊され沈没するという事態に。観客たちは避難するが、熱斗と炎山はバトルを続行、互いにプログラムアドバンスを発動させる。試合終了後、突如現れた謎のナビ・ファラオマンがブルースに襲いかかるが・・・。
The final N1 Grand Prix match is here... Netto VS. Enzan! Enzan's calculations show that there's a very slim chance that he'll lose to Netto. The match soon begins, and both comabatants fight strong! However, there's a mysterious Net Navi lurking in the network of the Mega Float (the artificial island the tournament is held on). The navi soon causes the Mega Float to sink! Everyone escapes from the island... except for Netto and Enzan, who refuse to stop their match! Kero, Higure, and Masa also stay behind. The match goes even stronger until Rockman and Blues are going head-to-head in a Beta Sword fight. After a great and powerful light pierces the night sky, the dust clears and Rockman falls. With Enzan declared the winner, Netto and Rockman both agree that they gave it their best. Blues helps Rockman up, only to get pushed out of the way as a laser pierces Rockman's chest! Rockman is deleted before everyone's eyes. The murderer is the mysterious navi, Pharaohman!